ENCORM: The encyclopedia of RNA modification.

Results of deepAnno

Basic Analysis

Distribution
Mechanism
Metagene

Coverage Analysis

Coverage around Transcription start/end Sites
Coverage around Translation start/end Sites
Coverage around Alternative Splicing Sites

Basic Analysis: Distribution

Here presents the distribution of RNA modification sites identified by ENCORE on different gene biotypes and gene features, which are based on datasets stored in ENCORE.

♥ Plot for RNA modification sites on different gene biotypes including protein_coding, lincRNA, miRNA, snRNA, tRNA, rRNA, pseudogene, Alu, etc. The image shows the frequency/abundance of RNA modification sites distributed on different gene biotypes. Click the button in the upper right corner of image to download the image in several formats.

♥ Plot for RNA modification sites on different gene features contained exon, intron, cds, 5’ utr and 3’ utr. The image shows the frequency ⁄ abundance of RNA modification sites distributed on different gene features. Click the button in the upper right corner of image to download the image in several formats.

Basic Analysis: Mechanism

Here presents all RNA modification sites guided by snoRNAs and/or emzymes like methylases, that identified by ENCORE and are based on datasets stored in ENCORE.

♥ The image shows the overview of RNA modifications guided by snoRNAs and/or enzymes respectivedly. Click the button in the upper right corner of image to download the image in several formats.

♥ Details about snoRNAs and RNA modification sites they guide. Only 100 entries are displayed in the table. Click the button to download all entries.

guideSite	snoRNANum	snoRNAName	snoRNADetail	Database	modName	modType	modLoc

♥ Details about enzymes and RNA modification sites they guide. Only 100 entries are displayed in the table. Click the button to download all entries.

enzymeName	enzymeDetail	sourceID	modName	modType	modLoc

Basic Analysis: Metagene

♥ Metagene plot for RNA modifications uploaded by user. Click the button in the upper right corner of image to download the image in several formats.

Coverage Analysis: Coverage around Transcription start/end Sites

♥ Plot for distribution of RNA modifications on transcription start/end sites (TSS/TES). The X-axis represents the distance from the transcription start/end sites. Click the button in the upper right corner of image to download the image in several formats.

Coverage Analysis: Coverage around Translation start/end Sites

♥ Plot for distribution of RNA modifications on translation start/end sites (TIS/TTS). The X-axis represents the distance from the translation start/end sites. Click the button in the upper right corner of image to download the image in several formats.

Coverage Analysis: Coverage around Alternative Splicing Sites

♥ Plot for distribution of RNA modifications on 5' and 3' alternative splicing sites (5'AS/3'AS). The X-axis represents the distance from the 5' or 3' alternative splicing sites. Click the button in the upper right corner of image to download the image in several formats.